IL_6GSM_094
3D structure
- PDB id
- 6GSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in open conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.15 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 6GSM|1|2|C|1273, 6GSM|1|2|U|1430, 6GSM|1|2|G|1433
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GSM_094 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.2737
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.2
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
6GSM|1|2|U|1271
6GSM|1|2|G|1272
6GSM|1|2|C|1273
6GSM|1|2|A|1274
6GSM|1|2|U|1275
6GSM|1|2|G|1276
6GSM|1|2|G|1277
*
6GSM|1|2|U|1428
6GSM|1|2|C|1429
6GSM|1|2|U|1430
6GSM|1|2|G|1431
6GSM|1|2|U|1432
6GSM|1|2|G|1433
6GSM|1|2|A|1434
6GSM|1|2|U|1435
6GSM|1|2|G|1436
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain D
- KLLA0D08305p
- Chain K
- KLLA0B08173p
- Chain U
- KLLA0F25542p
- Chain d
- 40S ribosomal protein S29
- Chain f
- Ubiquitin-40S ribosomal protein S27a
Coloring options: