IL_6GSN_045

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

GGUC*GGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSN_045 not in the Motif Atlas

Homologous match to IL_4V88_430

Geometric discrepancy: 0.1235

The information below is about IL_4V88_430

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6GSN|1|2|G|870
6GSN|1|2|G|871
6GSN|1|2|U|872
6GSN|1|2|C|873
*
6GSN|1|2|G|952
6GSN|1|2|G|953
6GSN|1|2|A|954
6GSN|1|2|C|955

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain B

40S ribosomal protein S1

Chain N

KLLA0F18040p

Chain b

40S ribosomal protein S27