IL_6GSN_058

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

6GSN|1|2|C|1158

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSN_058 not in the Motif Atlas

Homologous match to IL_4V88_443

Geometric discrepancy: 0.2147

The information below is about IL_4V88_443

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.9

Basepair signature

cWW-cWS-cHS-L-cWW-tWH

Number of instances in this motif group

15

Unit IDs

6GSN|1|2|A|1156
6GSN|1|2|C|1157
6GSN|1|2|C|1158
6GSN|1|2|A|1159
*
6GSN|1|2|U|1615
6GSN|1|2|C|1616
6GSN|1|2|C|1617
6GSN|1|2|C|1618
6GSN|1|2|U|1619

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain 1

Transfer RNA; tRNA

Chain 3

mRNA

Chain F

KLLA0D10659p

Chain Q

40S ribosomal protein S16

Chain a

40S ribosomal protein S26

Chain c

40S ribosomal protein S28