IL_6GSN_063

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

AAUAAGGAUUG*CUUGAUUUU

Length

20 nucleotides

Bulged bases

6GSN|1|2|G|1227

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSN|1|2|A|1222
6GSN|1|2|A|1223
6GSN|1|2|U|1224
6GSN|1|2|A|1225
6GSN|1|2|A|1226
6GSN|1|2|G|1227
6GSN|1|2|G|1228
6GSN|1|2|A|1229
6GSN|1|2|U|1230
6GSN|1|2|U|1231
6GSN|1|2|G|1232
*
6GSN|1|2|C|1251
6GSN|1|2|U|1252
6GSN|1|2|U|1253
6GSN|1|2|G|1254
6GSN|1|2|A|1255
6GSN|1|2|U|1256
6GSN|1|2|U|1257
6GSN|1|2|U|1258
6GSN|1|2|U|1259

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain K

KLLA0B08173p

Chain M

40S ribosomal protein S12

Chain d

40S ribosomal protein S29

Chain f

Ubiquitin-40S ribosomal protein S27a