IL_6GSN_082
3D structure
- PDB id
- 6GSN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.75 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- 6GSN|1|2|A|1754
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GSN_082 not in the Motif Atlas
- Geometric match to IL_6CZR_141
- Geometric discrepancy: 0.3986
- The information below is about IL_6CZR_141
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 36
Unit IDs
6GSN|1|2|C|1642
6GSN|1|2|G|1643
6GSN|1|2|C|1644
6GSN|1|2|U|1645
*
6GSN|1|2|A|1751
6GSN|1|2|A|1752
6GSN|1|2|A|1753
6GSN|1|2|A|1754
6GSN|1|2|G|1755
Current chains
- Chain 2
- 18S rRNA (1798-MER)
Nearby chains
- Chain 3
- mRNA
- Chain X
- RPS23
- Chain h
- 60S ribosomal protein L41-A
- Chain i
- Eukaryotic translation initiation factor 1A
- Chain m
- Eukaryotic translation initiation factor eIF-1
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