IL_6GSN_108

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

GAUA*UAAUU

Length

9 nucleotides

Bulged bases

6GSN|1|2|A|505

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSN_108 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.3544

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6GSN|1|2|G|479
6GSN|1|2|A|480
6GSN|1|2|U|481
6GSN|1|2|A|482
*
6GSN|1|2|U|503
6GSN|1|2|A|504
6GSN|1|2|A|505
6GSN|1|2|U|506
6GSN|1|2|U|507

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain J

KLLA0E23673p

Chain e

40S ribosomal protein S30