IL_6GXM_099

3D structure

PDB id

6GXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

6GXM|1|A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GXM_099 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.1617

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6GXM|1|A|C|2636
6GXM|1|A|U|2637
6GXM|1|A|G|2638
6GXM|1|A|A|2639
6GXM|1|A|G|2640
*
6GXM|1|A|C|2774
6GXM|1|A|G|2775
6GXM|1|A|A|2776
6GXM|1|A|G|2777
6GXM|1|A|A|2778
6GXM|1|A|U|2779
6GXM|1|A|G|2780
6GXM|1|A|A|2781
6GXM|1|A|G|2782

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13