IL_6GXM_100

3D structure

PDB id

6GXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GXM_100 not in the Motif Atlas

Geometric match to IL_5J7L_346

Geometric discrepancy: 0.1559

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6GXM|1|A|C|2652
6GXM|1|A|U|2653
6GXM|1|A|A|2654
6GXM|1|A|G|2655
6GXM|1|A|U|2656
6GXM|1|A|A|2657
6GXM|1|A|C|2658
*
6GXM|1|A|G|2663
6GXM|1|A|G|2664
6GXM|1|A|A|2665
6GXM|1|A|C|2666
6GXM|1|A|C|2667
6GXM|1|A|G|2668

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain w

Peptide chain release factor RF3