IL_6GXM_161

3D structure

PDB id

6GXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

6GXM|1|a|C|1200, 6GXM|1|a|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GXM_161 not in the Motif Atlas

Homologous match to IL_4LFB_045

Geometric discrepancy: 0.1506

The information below is about IL_4LFB_045

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_24264.1

Basepair signature

cWW-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

6GXM|1|a|G|1057
6GXM|1|a|G|1058
*
6GXM|1|a|U|1199
6GXM|1|a|C|1200
6GXM|1|a|A|1201
6GXM|1|a|U|1202
6GXM|1|a|C|1203

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain c

30S ribosomal protein S3

Chain j

30S ribosomal protein S10

Chain n

30S ribosomal protein S14