IL_6GXM_168

3D structure

PDB id

6GXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAG*CGGACC

Length

10 nucleotides

Bulged bases

6GXM|1|a|A|1257, 6GXM|1|a|A|1280

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GXM_168 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.2791

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_08849.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6GXM|1|a|G|1255
6GXM|1|a|A|1256
6GXM|1|a|A|1257
6GXM|1|a|G|1258
*
6GXM|1|a|C|1277
6GXM|1|a|G|1278
6GXM|1|a|G|1279
6GXM|1|a|A|1280
6GXM|1|a|C|1281
6GXM|1|a|C|1282

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain c

30S ribosomal protein S3

Chain j

30S ribosomal protein S10

Chain n

30S ribosomal protein S14