IL_6GXN_052

3D structure

PDB id

6GXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

6GXN|1|A|U|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GXN_052 not in the Motif Atlas

Homologous match to IL_5J7L_297

Geometric discrepancy: 0.11

The information below is about IL_5J7L_297

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6GXN|1|A|C|1437
6GXN|1|A|U|1438
6GXN|1|A|A|1439
6GXN|1|A|U|1440
*
6GXN|1|A|A|1551
6GXN|1|A|A|1552
6GXN|1|A|A|1553
6GXN|1|A|U|1554
6GXN|1|A|G|1555

Current chains

Chain A

23S ribosomal RNA

Nearby chains