IL_6GXN_082

3D structure

PDB id

6GXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAGG*CCGACCUUGAAAUAC

Length

20 nucleotides

Bulged bases

6GXN|1|A|C|2164, 6GXN|1|A|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GXN_082 not in the Motif Atlas

Homologous match to IL_5J7L_329

Geometric discrepancy: 0.4536

The information below is about IL_5J7L_329

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_87290.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

6GXN|1|A|G|2124
6GXN|1|A|G|2125
6GXN|1|A|A|2126
6GXN|1|A|G|2127
6GXN|1|A|G|2128
*
6GXN|1|A|C|2160
6GXN|1|A|C|2161
6GXN|1|A|G|2162
6GXN|1|A|A|2163
6GXN|1|A|C|2164
6GXN|1|A|C|2165
6GXN|1|A|U|2166
6GXN|1|A|U|2167
6GXN|1|A|G|2168
6GXN|1|A|A|2169
6GXN|1|A|A|2170
6GXN|1|A|A|2171
6GXN|1|A|U|2172
6GXN|1|A|A|2173
6GXN|1|A|C|2174

Current chains

Chain A

23S ribosomal RNA

Nearby chains