IL_6GXN_098

3D structure

PDB id

6GXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

6GXN|1|A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GXN_098 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.1617

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6GXN|1|A|C|2636
6GXN|1|A|U|2637
6GXN|1|A|G|2638
6GXN|1|A|A|2639
6GXN|1|A|G|2640
*
6GXN|1|A|C|2774
6GXN|1|A|G|2775
6GXN|1|A|A|2776
6GXN|1|A|G|2777
6GXN|1|A|A|2778
6GXN|1|A|U|2779
6GXN|1|A|G|2780
6GXN|1|A|A|2781
6GXN|1|A|G|2782

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13