IL_6GXN_124

3D structure

PDB id

6GXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6GXN|1|a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GXN_124 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1583

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

6GXN|1|a|G|147
6GXN|1|a|G|148
6GXN|1|a|A|149
6GXN|1|a|U|150
6GXN|1|a|A|151
6GXN|1|a|A|152
6GXN|1|a|C|153
*
6GXN|1|a|G|168
6GXN|1|a|C|169
6GXN|1|a|U|170
6GXN|1|a|A|171
6GXN|1|a|A|172
6GXN|1|a|U|173
6GXN|1|a|A|174
6GXN|1|a|C|175

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20