IL_6GXN_135

3D structure

PDB id

6GXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GXN_135 not in the Motif Atlas

Geometric match to IL_5J7L_023

Geometric discrepancy: 0.1345

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

6GXN|1|a|G|450
6GXN|1|a|A|451
6GXN|1|a|A|452
6GXN|1|a|G|453
6GXN|1|a|G|454
6GXN|1|a|G|455
*
6GXN|1|a|C|477
6GXN|1|a|A|478
6GXN|1|a|U|479
6GXN|1|a|U|480
6GXN|1|a|G|481
6GXN|1|a|A|482
6GXN|1|a|C|483

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain w

Peptide chain release factor RF3