3D structure

PDB id
6GXN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
AGAAUU*AGGAAU
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6GXN_146 not in the Motif Atlas
Homologous match to IL_4LFB_030
Geometric discrepancy: 0.1366
The information below is about IL_4LFB_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04668.2
Basepair signature
cWW-cWW-cWW-L-R-L-R-cWW
Number of instances in this motif group
8

Unit IDs

6GXN|1|a|A|673
6GXN|1|a|G|674
6GXN|1|a|A|675
6GXN|1|a|A|676
6GXN|1|a|U|677
6GXN|1|a|U|678
*
6GXN|1|a|A|712
6GXN|1|a|G|713
6GXN|1|a|G|714
6GXN|1|a|A|715
6GXN|1|a|A|716
6GXN|1|a|U|717

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L2
Chain f
30S ribosomal protein S6
Chain k
30S ribosomal protein S11
Chain r
30S ribosomal protein S18
Chain u
30S ribosomal protein S21

Coloring options:


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