IL_6GXN_166

3D structure

PDB id

6GXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UACAAAG*CAUAAAG

Length

14 nucleotides

Bulged bases

6GXN|1|a|U|1286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GXN_166 not in the Motif Atlas

Homologous match to IL_5J7L_054

Geometric discrepancy: 0.1541

The information below is about IL_5J7L_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09129.2

Basepair signature

cWW-L-R-tWH-L-R-L-tWW-cWW

Number of instances in this motif group

2

Unit IDs

6GXN|1|a|U|1247
6GXN|1|a|A|1248
6GXN|1|a|C|1249
6GXN|1|a|A|1250
6GXN|1|a|A|1251
6GXN|1|a|A|1252
6GXN|1|a|G|1253
*
6GXN|1|a|C|1284
6GXN|1|a|A|1285
6GXN|1|a|U|1286
6GXN|1|a|A|1287
6GXN|1|a|A|1288
6GXN|1|a|A|1289
6GXN|1|a|G|1290

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S7

Chain i

30S ribosomal protein S9

Chain j

30S ribosomal protein S10

Chain n

30S ribosomal protein S14