IL_6GXN_173
3D structure
- PDB id
- 6GXN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAC*GAAG
- Length
- 7 nucleotides
- Bulged bases
- 6GXN|1|a|A|1492, 6GXN|1|a|A|1493
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GXN_173 not in the Motif Atlas
- Geometric match to IL_2O3X_001
- Geometric discrepancy: 0.2126
- The information below is about IL_2O3X_001
- Detailed Annotation
- Stack and bulge
- Broad Annotation
- Stack and bulge
- Motif group
- IL_53541.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
6GXN|1|a|C|1407
6GXN|1|a|A|1408
6GXN|1|a|C|1409
*
6GXN|1|a|G|1491
6GXN|1|a|A|1492
6GXN|1|a|A|1493
6GXN|1|a|G|1494
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain 7
- mRNA
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- 30S ribosomal protein S12
- Chain v
- Peptide chain release factor RF1
Coloring options: