IL_6GXN_189

3D structure

PDB id

6GXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GXN_189 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.2157

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6GXN|1|A|U|1851
6GXN|1|A|U|1852
6GXN|1|A|A|1853
6GXN|1|A|A|1854
6GXN|1|A|U|1855
6GXN|1|A|U|1856
6GXN|1|A|G|1857
6GXN|1|A|A|1858
6GXN|1|A|U|1859
6GXN|1|A|G|1860
*
6GXN|1|A|U|1882
6GXN|1|A|U|1883
6GXN|1|A|G|1884
6GXN|1|A|A|1885
6GXN|1|A|U|1886
6GXN|1|A|C|1887
6GXN|1|A|G|1888
6GXN|1|A|A|1889
6GXN|1|A|A|1890
6GXN|1|A|G|1891

Current chains

Chain A

23S ribosomal RNA

Nearby chains