IL_6GZ3_110
3D structure
- PDB id
- 6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGGAAUG*CGAGAGA
- Length
- 14 nucleotides
- Bulged bases
- 6GZ3|1|A2|U|2640, 6GZ3|1|A2|A|2653
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZ3_110 not in the Motif Atlas
- Homologous match to IL_5TBW_073
- Geometric discrepancy: 0.2278
- The information below is about IL_5TBW_073
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
6GZ3|1|A2|U|2635
6GZ3|1|A2|G|2636
6GZ3|1|A2|G|2637
6GZ3|1|A2|A|2638
6GZ3|1|A2|A|2639
6GZ3|1|A2|U|2640
6GZ3|1|A2|G|2641
*
6GZ3|1|A2|C|2651
6GZ3|1|A2|G|2652
6GZ3|1|A2|A|2653
6GZ3|1|A2|G|2654
6GZ3|1|A2|A|2655
6GZ3|1|A2|G|2656
6GZ3|1|A2|A|2657
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain AR
- ribosomal protein eL19
- Chain AZ
- 60S ribosomal protein L27
- Chain Ac
- ribosomal protein eL30
- Chain Ag
- ribosomal protein eL34
- Chain Ap
- ribosomal protein eL43
- Chain BL
- Ribosomal protein S11
- Chain BN
- ribosomal protein uS15
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