IL_6GZ3_158
3D structure
- PDB id
- 6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZ3_158 not in the Motif Atlas
- Geometric match to IL_5TBW_116
- Geometric discrepancy: 0.1606
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6GZ3|1|A2|C|4558
6GZ3|1|A2|U|4559
6GZ3|1|A2|C|4560
6GZ3|1|A2|A|4561
6GZ3|1|A2|G|4562
6GZ3|1|A2|U|4563
6GZ3|1|A2|A|4564
6GZ3|1|A2|C|4565
*
6GZ3|1|A2|G|4570
6GZ3|1|A2|G|4571
6GZ3|1|A2|A|4572
6GZ3|1|A2|A|4573
6GZ3|1|A2|C|4574
6GZ3|1|A2|C|4575
6GZ3|1|A2|G|4576
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain AB
- ribosomal protein uL3
- Chain AH
- ribosomal protein uL6
- Chain AV
- Ribosomal protein L23
- Chain Ct
- eukaryotic elongation factor 2 (eEF2)
Coloring options: