IL_6GZ3_198
3D structure
- PDB id
- 6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 6GZ3|1|B1|U|361, 6GZ3|1|B1|C|399
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZ3_198 not in the Motif Atlas
- Homologous match to IL_4V88_402
- Geometric discrepancy: 0.121
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
6GZ3|1|B1|U|359
6GZ3|1|B1|A|360
6GZ3|1|B1|U|361
6GZ3|1|B1|C|362
6GZ3|1|B1|A|363
6GZ3|1|B1|A|364
*
6GZ3|1|B1|U|396
6GZ3|1|B1|G|397
6GZ3|1|B1|A|398
6GZ3|1|B1|C|399
6GZ3|1|B1|C|400
6GZ3|1|B1|A|401
6GZ3|1|B1|C|402
6GZ3|1|B1|G|403
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain BI
- ribosomal protein eS8
- Chain BL
- Ribosomal protein S11
- Chain BX
- Ribosomal protein S23
Coloring options: