IL_6GZ3_210
3D structure
- PDB id
- 6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 6GZ3|1|B1|A|628, 6GZ3|1|B1|U|630, 6GZ3|1|B1|U|631
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZ3_210 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.1844
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6GZ3|1|B1|G|611
6GZ3|1|B1|U|612
6GZ3|1|B1|G|613
6GZ3|1|B1|C|614
6GZ3|1|B1|C|615
6GZ3|1|B1|A|616
6GZ3|1|B1|G|617
*
6GZ3|1|B1|C|624
6GZ3|1|B1|G|625
6GZ3|1|B1|G|626
6GZ3|1|B1|U|627
6GZ3|1|B1|A|628
6GZ3|1|B1|A|629
6GZ3|1|B1|U|630
6GZ3|1|B1|U|631
6GZ3|1|B1|C|632
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain BD
- ribosomal protein uS3
- Chain BX
- Ribosomal protein S23
- Chain Be
- ribosomal protein eS30
- Chain Bx
- mRNA
- Chain Ct
- eukaryotic elongation factor 2 (eEF2)
Coloring options: