IL_6GZ3_225
3D structure
- PDB id
- 6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GCUAG*CUUGGACC
- Length
- 13 nucleotides
- Bulged bases
- 6GZ3|1|B1|G|970
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZ3_225 not in the Motif Atlas
- Geometric match to IL_7A0S_004
- Geometric discrepancy: 0.2983
- The information below is about IL_7A0S_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_94910.1
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
6GZ3|1|B1|G|952
6GZ3|1|B1|C|953
6GZ3|1|B1|U|954
6GZ3|1|B1|A|955
6GZ3|1|B1|G|956
*
6GZ3|1|B1|C|967
6GZ3|1|B1|U|968
6GZ3|1|B1|U|969
6GZ3|1|B1|G|970
6GZ3|1|B1|G|971
6GZ3|1|B1|A|972
6GZ3|1|B1|C|973
6GZ3|1|B1|C|974
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain BB
- 40S ribosomal protein S3a
- Chain BO
- ribosomal protein uS11
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