IL_6GZ3_235
3D structure
- PDB id
- 6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 6GZ3|1|B1|C|1215, 6GZ3|1|B1|C|1216
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZ3_235 not in the Motif Atlas
- Homologous match to IL_4V88_443
- Geometric discrepancy: 0.1689
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
6GZ3|1|B1|A|1214
6GZ3|1|B1|C|1215
6GZ3|1|B1|C|1216
6GZ3|1|B1|A|1217
*
6GZ3|1|B1|U|1681
6GZ3|1|B1|C|1682
6GZ3|1|B1|C|1683
6GZ3|1|B1|C|1684
6GZ3|1|B1|U|1685
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain BF
- Ribosomal protein S5
- Chain BQ
- ribosomal protein uS9
- Chain BU
- ribosomal protein uS10
- Chain Bc
- Ribosomal protein S28
- Chain Bw
- Transfer RNA; tRNA
- Chain Bx
- mRNA
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