IL_6GZ3_269

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCUUUC*GGGA

Length

10 nucleotides

Bulged bases

6GZ3|1|A2|U|507, 6GZ3|1|A2|U|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ3_269 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3919

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

6GZ3|1|A2|U|504
6GZ3|1|A2|C|505
6GZ3|1|A2|U|506
6GZ3|1|A2|U|507
6GZ3|1|A2|U|508
6GZ3|1|A2|C|509
*
6GZ3|1|A2|G|640
6GZ3|1|A2|G|641
6GZ3|1|A2|G|642
6GZ3|1|A2|A|643

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AL

ribosomal protein eL13

Chain Aa

ribosomal protein uL15