IL_6GZ4_002

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAUC*GUC

Length

7 nucleotides

Bulged bases

6GZ4|1|A2|U|13

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ4_002 not in the Motif Atlas

Geometric match to IL_5TBW_378

Geometric discrepancy: 0.1868

The information below is about IL_5TBW_378

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6GZ4|1|A2|G|11
6GZ4|1|A2|A|12
6GZ4|1|A2|U|13
6GZ4|1|A2|C|14
*
6GZ4|1|A3|G|143
6GZ4|1|A3|U|144
6GZ4|1|A3|C|145

Current chains

Chain A2

28S ribosomal RNA

Chain A3

5.8S ribosomal RNA

Nearby chains

Chain AG

ribosomal protein eL8

Chain AN

ribosomal protein eL15

Chain AX

ribosomal protein uL23