IL_6GZ4_006
3D structure
- PDB id
- 6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CUCAGUAA*UGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZ4_006 not in the Motif Atlas
- Homologous match to IL_8C3A_006
- Geometric discrepancy: 0.1323
- The information below is about IL_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_88613.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
6GZ4|1|A2|C|81
6GZ4|1|A2|U|82
6GZ4|1|A2|C|83
6GZ4|1|A2|A|84
6GZ4|1|A2|G|85
6GZ4|1|A2|U|86
6GZ4|1|A2|A|87
6GZ4|1|A2|A|88
*
6GZ4|1|A2|U|96
6GZ4|1|A2|G|97
6GZ4|1|A2|A|98
6GZ4|1|A2|A|99
6GZ4|1|A2|C|100
6GZ4|1|A2|A|101
6GZ4|1|A2|G|102
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain AL
- ribosomal protein eL13
- Chain AN
- ribosomal protein eL15
- Chain AQ
- ribosomal protein eL18
- Chain Aa
- ribosomal protein uL15
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