IL_6GZ4_014

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ4_014 not in the Motif Atlas

Geometric match to IL_4C7O_002

Geometric discrepancy: 0.279

The information below is about IL_4C7O_002

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

6GZ4|1|A2|C|171
6GZ4|1|A2|C|172
6GZ4|1|A2|G|173
*
6GZ4|1|A2|C|256
6GZ4|1|A2|G|257

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AL

ribosomal protein eL13

Chain Ah

ribosomal protein uL29