IL_6GZ4_057

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GG*CGCC

Length

6 nucleotides

Bulged bases

6GZ4|1|A2|C|1361

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ4_057 not in the Motif Atlas

Geometric match to IL_6JXM_001

Geometric discrepancy: 0.2463

The information below is about IL_6JXM_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

6GZ4|1|A2|G|1343
6GZ4|1|A2|G|1344
*
6GZ4|1|A2|C|1359
6GZ4|1|A2|G|1360
6GZ4|1|A2|C|1361
6GZ4|1|A2|C|1362

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AC

ribosomal protein uL4

Chain AL

ribosomal protein eL13

Chain AN

ribosomal protein eL15