IL_6GZ4_068

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGG*UAAUC

Length

8 nucleotides

Bulged bases

6GZ4|1|A2|G|1607, 6GZ4|1|A2|A|1619, 6GZ4|1|A2|A|1620

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ4_068 not in the Motif Atlas

Homologous match to IL_8C3A_036

Geometric discrepancy: 0.0993

The information below is about IL_8C3A_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90991.8

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

6GZ4|1|A2|G|1606
6GZ4|1|A2|G|1607
6GZ4|1|A2|G|1608
*
6GZ4|1|A2|U|1618
6GZ4|1|A2|A|1619
6GZ4|1|A2|A|1620
6GZ4|1|A2|U|1621
6GZ4|1|A2|C|1622

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AA

ribosomal protein uL2

Chain AN

ribosomal protein eL15

Chain AP

ribosomal protein uL22

Chain Aj

ribosomal protein eL37