IL_6GZ4_078

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUCU*AAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ4_078 not in the Motif Atlas

Geometric match to IL_4V9F_003

Geometric discrepancy: 0.3394

The information below is about IL_4V9F_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

6GZ4|1|A2|G|1735
6GZ4|1|A2|U|1736
6GZ4|1|A2|C|1737
6GZ4|1|A2|U|1738
*
6GZ4|1|A2|A|1757
6GZ4|1|A2|A|1758
6GZ4|1|A2|C|1759

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AD

ribosomal protein uL18