IL_6GZ4_104
3D structure
- PDB id
- 6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAGUGG*CGC
- Length
- 9 nucleotides
- Bulged bases
- 6GZ4|1|A2|G|2523, 6GZ4|1|A2|U|2524, 6GZ4|1|A2|G|2525
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZ4_104 not in the Motif Atlas
- Geometric match to IL_3TD0_005
- Geometric discrepancy: 0.2413
- The information below is about IL_3TD0_005
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_57744.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
6GZ4|1|A2|G|2521
6GZ4|1|A2|A|2522
6GZ4|1|A2|G|2523
6GZ4|1|A2|U|2524
6GZ4|1|A2|G|2525
6GZ4|1|A2|G|2526
*
6GZ4|1|A2|C|2751
6GZ4|1|A2|G|2752
6GZ4|1|A2|C|2753
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain A3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Ak
- ribosomal protein eL38
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