3D structure

PDB id
6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
GAGUGG*CGC
Length
9 nucleotides
Bulged bases
6GZ4|1|A2|G|2523, 6GZ4|1|A2|U|2524, 6GZ4|1|A2|G|2525
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6GZ4_104 not in the Motif Atlas
Geometric match to IL_3TD0_005
Geometric discrepancy: 0.2413
The information below is about IL_3TD0_005
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_57744.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
22

Unit IDs

6GZ4|1|A2|G|2521
6GZ4|1|A2|A|2522
6GZ4|1|A2|G|2523
6GZ4|1|A2|U|2524
6GZ4|1|A2|G|2525
6GZ4|1|A2|G|2526
*
6GZ4|1|A2|C|2751
6GZ4|1|A2|G|2752
6GZ4|1|A2|C|2753

Current chains

Chain A2
28S ribosomal RNA

Nearby chains

Chain A3
5.8S ribosomal RNA; 5.8S rRNA
Chain Ak
ribosomal protein eL38

Coloring options:


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