IL_6GZ4_125
3D structure
- PDB id
- 6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UCAAAGU*AAUGAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZ4_125 not in the Motif Atlas
- Homologous match to IL_8C3A_093
- Geometric discrepancy: 0.1753
- The information below is about IL_8C3A_093
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_36973.8
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6GZ4|1|A2|U|3686
6GZ4|1|A2|C|3687
6GZ4|1|A2|A|3688
6GZ4|1|A2|A|3689
6GZ4|1|A2|A|3690
6GZ4|1|A2|G|3691
6GZ4|1|A2|U|3692
*
6GZ4|1|A2|A|3703
6GZ4|1|A2|A|3704
6GZ4|1|A2|U|3705
6GZ4|1|A2|G|3706
6GZ4|1|A2|A|3707
6GZ4|1|A2|A|3708
6GZ4|1|A2|G|3709
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain AA
- ribosomal protein uL2
- Chain Ai
- ribosomal protein eL36
- Chain Ao
- ribosomal protein eL42
- Chain Bw
- Transfer RNA; tRNA
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