IL_6GZ4_128

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

6GZ4|1|A2|A|3756, 6GZ4|1|A2|C|3762, 6GZ4|1|A2|C|3781

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ4_128 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.2155

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6GZ4|1|A2|C|3752
6GZ4|1|A2|C|3753
6GZ4|1|A2|A|3754
6GZ4|1|A2|A|3755
6GZ4|1|A2|A|3756
6GZ4|1|A2|U|3757
6GZ4|1|A2|G|3758
6GZ4|1|A2|C|3759
6GZ4|1|A2|C|3760
6GZ4|1|A2|U|3761
6GZ4|1|A2|C|3762
6GZ4|1|A2|G|3763
*
6GZ4|1|A2|C|3779
6GZ4|1|A2|G|3780
6GZ4|1|A2|C|3781
6GZ4|1|A2|G|3782

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain An

ribosomal protein eL41

Chain B1

Small subunit ribosomal RNA; SSU rRNA