IL_6GZ4_162

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

6GZ4|1|A2|U|4596, 6GZ4|1|A2|U|4598

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ4_162 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.3022

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6GZ4|1|A2|U|4594
6GZ4|1|A2|G|4595
6GZ4|1|A2|U|4596
6GZ4|1|A2|A|4597
6GZ4|1|A2|U|4598
6GZ4|1|A2|G|4599
*
6GZ4|1|A2|C|4624
6GZ4|1|A2|G|4625
6GZ4|1|A2|A|4626
6GZ4|1|A2|A|4627
6GZ4|1|A2|G|4628

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AB

ribosomal protein uL3

Chain AW

ribosomal protein eL24

Chain Ad

ribosomal protein eL31