IL_6GZ4_169

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCCUG*CGUCA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ4_169 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3326

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6GZ4|1|A2|U|4843
6GZ4|1|A2|C|4844
6GZ4|1|A2|C|4845
6GZ4|1|A2|U|4846
6GZ4|1|A2|G|4847
*
6GZ4|1|A2|C|4888
6GZ4|1|A2|G|4889
6GZ4|1|A2|U|4890
6GZ4|1|A2|C|4891
6GZ4|1|A2|A|4892

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AE

ribosomal protein eL6

Chain AM

ribosomal protein eL14

Chain AO

ribosomal protein uL13