IL_6GZ4_178

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ4_178 not in the Motif Atlas

Homologous match to IL_8C3A_141

Geometric discrepancy: 0.1574

The information below is about IL_8C3A_141

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6GZ4|1|A2|A|4972
6GZ4|1|A2|G|4973
6GZ4|1|A2|A|4974
6GZ4|1|A2|G|4975
*
6GZ4|1|A2|C|4990
6GZ4|1|A2|G|4991
6GZ4|1|A2|A|4992
6GZ4|1|A2|U|4993

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AR

ribosomal protein eL19

Chain BI

ribosomal protein eS8