IL_6GZ4_207

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ4_207 not in the Motif Atlas

Homologous match to IL_4V88_406

Geometric discrepancy: 0.1819

The information below is about IL_4V88_406

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

6GZ4|1|B1|C|459
6GZ4|1|B1|A|460
6GZ4|1|B1|U|461
*
6GZ4|1|B1|A|468
6GZ4|1|B1|A|469
6GZ4|1|B1|G|470

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain AV

ribosomal protein uL14

Chain BG

ribosomal protein eS6