IL_6GZ4_209

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCC*GGGA

Length

7 nucleotides

Bulged bases

6GZ4|1|B1|G|507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ4_209 not in the Motif Atlas

Geometric match to IL_3R1C_011

Geometric discrepancy: 0.3599

The information below is about IL_3R1C_011

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

6GZ4|1|B1|U|495
6GZ4|1|B1|C|496
6GZ4|1|B1|C|497
*
6GZ4|1|B1|G|505
6GZ4|1|B1|G|506
6GZ4|1|B1|G|507
6GZ4|1|B1|A|508

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BE

ribosomal protein eS4

Chain BJ

ribosomal protein uS4

Chain BY

ribosomal protein eS24