IL_6GZ4_223
3D structure
- PDB id
- 6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAAAAAAUU*ACCGCAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZ4_223 not in the Motif Atlas
- Homologous match to IL_4V88_425
- Geometric discrepancy: 0.3019
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6GZ4|1|B1|G|807
6GZ4|1|B1|A|808
6GZ4|1|B1|A|809
6GZ4|1|B1|A|810
6GZ4|1|B1|A|811
6GZ4|1|B1|A|812
6GZ4|1|B1|A|813
6GZ4|1|B1|U|814
6GZ4|1|B1|U|815
*
6GZ4|1|B1|A|849
6GZ4|1|B1|C|850
6GZ4|1|B1|C|851
6GZ4|1|B1|G|852
6GZ4|1|B1|C|853
6GZ4|1|B1|A|854
6GZ4|1|B1|G|855
6GZ4|1|B1|C|856
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain BE
- ribosomal protein eS4
- Chain BJ
- ribosomal protein uS4
- Chain BL
- ribosomal protein uS17
- Chain BW
- ribosomal protein uS8
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