IL_6GZ4_234

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAU*GCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ4_234 not in the Motif Atlas

Geometric match to IL_4V88_438

Geometric discrepancy: 0.171

The information below is about IL_4V88_438

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6GZ4|1|B1|C|1098
6GZ4|1|B1|G|1099
6GZ4|1|B1|A|1100
6GZ4|1|B1|U|1101
*
6GZ4|1|B1|G|1131
6GZ4|1|B1|C|1132
6GZ4|1|B1|A|1133
6GZ4|1|B1|G|1134

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BA

ribosomal protein uS2

Chain BB

ribosomal protein eS1

Chain BN

ribosomal protein uS15

Chain BR

ribosomal protein eS17

Chain Ba

ribosomal protein eS26