IL_6GZ4_238

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGA*UACA

Length

7 nucleotides

Bulged bases

6GZ4|1|B1|A|1695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ4_238 not in the Motif Atlas

Geometric match to IL_4WF9_018

Geometric discrepancy: 0.2981

The information below is about IL_4WF9_018

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

6GZ4|1|B1|U|1202
6GZ4|1|B1|G|1203
6GZ4|1|B1|A|1204
*
6GZ4|1|B1|U|1694
6GZ4|1|B1|A|1695
6GZ4|1|B1|C|1696
6GZ4|1|B1|A|1697

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BC

ribosomal protein eS28

Chain Ba

ribosomal protein eS26

Chain Bx

mRNA