IL_6GZ4_245

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

ACA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ4_245 not in the Motif Atlas

Homologous match to IL_4V88_448

Geometric discrepancy: 0.2241

The information below is about IL_4V88_448

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30342.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

10

Unit IDs

6GZ4|1|B1|A|1291
6GZ4|1|B1|C|1292
6GZ4|1|B1|A|1293
*
6GZ4|1|B1|U|1306
6GZ4|1|B1|U|1307
6GZ4|1|B1|U|1308

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BM

ribosomal protein eS12

Chain BP

ribosomal protein uS19

Chain Bd

ribosomal protein uS14

Chain Bf

ribosomal protein eS31