IL_6GZ4_250

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ4_250 not in the Motif Atlas

Homologous match to IL_4V88_453

Geometric discrepancy: 0.246

The information below is about IL_4V88_453

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

6GZ4|1|B1|U|1347
6GZ4|1|B1|G|1348
6GZ4|1|B1|G|1349
*
6GZ4|1|B1|C|1380
6GZ4|1|B1|G|1381
6GZ4|1|B1|A|1382

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BA

ribosomal protein uS2

Chain BC

ribosomal protein eS28

Chain BD

ribosomal protein uS3

Chain BR

ribosomal protein eS17