IL_6GZ4_257
3D structure
- PDB id
- 6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUGCCUACC*GUAACC
- Length
- 15 nucleotides
- Bulged bases
- 6GZ4|1|B1|C|1553, 6GZ4|1|B1|C|1554, 6GZ4|1|B1|A|1580, 6GZ4|1|B1|C|1581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZ4_257 not in the Motif Atlas
- Geometric match to IL_4LFB_052
- Geometric discrepancy: 0.3233
- The information below is about IL_4LFB_052
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_08849.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6GZ4|1|B1|G|1550
6GZ4|1|B1|U|1551
6GZ4|1|B1|G|1552
6GZ4|1|B1|C|1553
6GZ4|1|B1|C|1554
6GZ4|1|B1|U|1555
6GZ4|1|B1|A|1556
6GZ4|1|B1|C|1557
6GZ4|1|B1|C|1558
*
6GZ4|1|B1|G|1577
6GZ4|1|B1|U|1578
6GZ4|1|B1|A|1579
6GZ4|1|B1|A|1580
6GZ4|1|B1|C|1581
6GZ4|1|B1|C|1582
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain BD
- ribosomal protein uS3
- Chain BK
- ribosomal protein eS10
- Chain BQ
- ribosomal protein uS9
- Chain BU
- ribosomal protein uS10
- Chain Bd
- ribosomal protein uS14
Coloring options: