IL_6GZ4_279

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAU*GGCAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ4_279 not in the Motif Atlas

Homologous match to IL_8C3A_025

Geometric discrepancy: 0.2511

The information below is about IL_8C3A_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07235.3

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6GZ4|1|A2|G|1408
6GZ4|1|A2|G|1409
6GZ4|1|A2|A|1410
6GZ4|1|A2|U|1411
*
6GZ4|1|A2|G|1438
6GZ4|1|A2|G|1439
6GZ4|1|A2|C|1440
6GZ4|1|A2|A|1441
6GZ4|1|A2|C|1442

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AQ

ribosomal protein eL18

Chain Ab

ribosomal protein eL29