IL_6GZ5_108

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AACAAUG*CUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_108 not in the Motif Atlas

Homologous match to IL_8C3A_080

Geometric discrepancy: 0.1728

The information below is about IL_8C3A_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49460.3

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6GZ5|1|A2|A|2811
6GZ5|1|A2|A|2812
6GZ5|1|A2|C|2813
6GZ5|1|A2|A|2814
6GZ5|1|A2|A|2815
6GZ5|1|A2|U|2816
6GZ5|1|A2|G|2817
*
6GZ5|1|A2|C|3821
6GZ5|1|A2|U|3822
6GZ5|1|A2|A|3823
6GZ5|1|A2|U|3824

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AB

ribosomal protein uL3

Chain AP

ribosomal protein uL22

Chain Ad

ribosomal protein eL31