IL_8C3A_080

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AAUAAUG*CUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49460.2

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8C3A|1|1|A|1879
8C3A|1|1|A|1880
8C3A|1|1|U|1881
8C3A|1|1|A|1882
8C3A|1|1|A|1883
8C3A|1|1|U|1884
8C3A|1|1|G|1885
*
8C3A|1|1|C|2324
8C3A|1|1|U|2325
8C3A|1|1|A|2326
8C3A|1|1|U|2327

Current chains

Chain 1

25S

Nearby chains

Chain AE

60S ribosomal protein L31-B

Chain k

60S ribosomal protein L3

Chain x

Ribosomal protein L22