IL_6GZ5_116

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

6GZ5|1|A2|A|3634, 6GZ5|1|A2|U|3650, 6GZ5|1|A2|C|3654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_116 not in the Motif Atlas

Homologous match to IL_8C3A_088

Geometric discrepancy: 0.1211

The information below is about IL_8C3A_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

6GZ5|1|A2|C|3631
6GZ5|1|A2|G|3632
6GZ5|1|A2|A|3633
6GZ5|1|A2|A|3634
6GZ5|1|A2|G|3635
6GZ5|1|A2|G|3636
*
6GZ5|1|A2|U|3648
6GZ5|1|A2|G|3649
6GZ5|1|A2|U|3650
6GZ5|1|A2|U|3651
6GZ5|1|A2|G|3652
6GZ5|1|A2|A|3653
6GZ5|1|A2|C|3654
6GZ5|1|A2|G|3655

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AA

ribosomal protein uL2

Chain Ap

ribosomal protein eL43

Chain B1

Small subunit ribosomal RNA; SSU rRNA